Genome sequence mapping algorithms

Bioinformatics resources for the next-generation sequencing technology 

Eland(Efficient Local Alignment of Nucleotide Data)

RMAP: A Program for mapping Solexa reads

SHRiMP-SHort Read Mapping Package

Maq: Mapping and Assembly with Qualities

SOAP-Short Oligonucleotide Analysis Package

SSAHA2(Sequence Search and Alignment by Hashing Algorithm)