As of early 2008, there are over 4600 genomes fully sequenced.

List of fully sequenced genomes (please add if you find a missing one)

List from GenomeNewsNetwork

Aeropyrum pernix Agrobacterium tumefaciens Anabaena Anopheles gambiae Apis mellifera Aquifex aeolicus Arabidopsis thaliana Archaeoglobus fulgidus Ashbya gossypii Bacillus anthracis Bacillus cereus Bacillus halodurans Bacillus licheniformis Bacillus subtilis Bacteroides fragilis Bacteroides thetaiotaomicron Bartonella henselae Bartonella quintana Bdellovibrio bacteriovorus Bifidobacterium longum Blochmannia floridanus Bordetella bronchiseptica Bordetella parapertussis Bordetella pertussis Borrelia burgdorferi Bradyrhizobium japonicum Brucella melitensis Brucella suis Buchnera aphidicola Burkholderia mallei Burkholderia pseudomallei Caenorhabditis briggsae Caenorhabditis elegans Campylobacter jejuni Candida glabrata Canis familiaris Caulobacter crescentus Chlamydia muridarum Chlamydia trachomatis Chlamydophila caviae Chlamydophila pneumoniae Chlorobium tepidum Chromobacterium violaceum Ciona intestinalis Clostridium acetobutylicum Clostridium perfringens Clostridium tetani Corynebacterium diphtheriae Corynebacterium efficiens Coxiella burnetii Cryptosporidium hominis Cryptosporidium parvum Cyanidioschyzon merolae Debaryomyces hansenii Deinococcus radiodurans Desulfotalea psychrophila Desulfovibrio vulgaris Drosophila melanogaster Encephalitozoon cuniculi Enterococcus faecalis Erwinia carotovora Escherichia coli Fusobacterium nucleatum

Gallus gallus Geobacter sulfurreducens Gloeobacter violaceus Guillardia theta Haemophilus ducreyi Haemophilus influenzae Halobacterium Helicobacter hepaticus Helicobacter pylori Homo sapiens Kluyveromyces waltii Lactobacillus johnsonii Lactobacillus plantarum Legionella pneumophila Leifsonia xyli Lactococcus lactis Leptospira interrogans Listeria innocua Listeria monocytogenes Magnaporthe grisea Mannheimia succiniciproducens Mesoplasma florum Mesorhizobium loti Methanobacterium thermoautotrophicum Methanococcoides burtonii Methanococcus jannaschii Methanococcus maripaludis Methanogenium frigidum Methanopyrus kandleri Methanosarcina acetivorans Methanosarcina mazei Methylococcus capsulatus Mus musculus Mycobacterium bovis Mycobacterium leprae Mycobacterium paratuberculosis Mycobacterium tuberculosis Mycoplasma gallisepticum Mycoplasma genitalium Mycoplasma mycoides Mycoplasma penetrans Mycoplasma pneumoniae Mycoplasma pulmonis Mycoplasma mobile Nanoarchaeum equitans Neisseria meningitidis Neurospora crassa Nitrosomonas europaea Nocardia farcinica Oceanobacillus iheyensis Onions yellows phytoplasma Oryza sativa Pan troglodytes Pasteurella multocida Phanerochaete chrysosporium Photorhabdus luminescens Picrophilus torridus Plasmodium falciparum Plasmodium yoelii yoelii Populus trichocarpa Porphyromonas gingivalis Prochlorococcus marinus Propionibacterium acnes

Protochlamydia amoebophila Pseudomonas aeruginosa Pseudomonas putida Pseudomonas syringae Pyrobaculum aerophilum Pyrococcus abyssi Pyrococcus furiosus Pyrococcus horikoshii Pyrolobus fumarii Ralstonia solanacearum Rattus norvegicus Rhodopirellula baltica Rhodopseudomonas palustris Rickettsia conorii Rickettsia typhi Rickettsia prowazekii Rickettsia sibirica Saccharomyces cerevisiae Saccharopolyspora erythraea Salmonella enterica Salmonella typhimurium Schizosaccharomyces pombe Shewanella oneidensis Shigella flexneria Sinorhizobium meliloti Staphylococcus aureus Staphylococcus epidermidis Streptococcus agalactiae Streptococcus mutans Streptococcus pneumoniae Streptococcus pyogenes Streptococcus thermophilus Streptomyces avermitilis Streptomyces coelicolor Sulfolobus solfataricus Sulfolobus tokodaii Synechococcus Synechocystis Takifugu rubripes Tetraodon nigroviridis Thalassiosira pseudonana Thermoanaerobacter tengcongensis Thermoplasma acidophilum Thermoplasma volcanium Thermosynechococcus elongatus Thermotagoa maritima Thermus thermophilus Treponema denticola Treponema pallidum Tropheryma whipplei Ureaplasma urealyticum Vibrio cholerae Vibrio parahaemolyticus Vibrio vulnificus Wigglesworthia glossinidia Wolbachia pipientis Wolinella succinogenes Xanthomonas axonopodis Xanthomonas campestris Xylella fastidiosa Yarrowia lipolytica Yersinia pseudotuberculosis Yersinia pestis