Difference between revisions of "PageM2P4"

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<span id="subtitle">연구소개</span> <span class="subitem">[[PageM2P1|한국인게놈프로젝트]]</span> <span class="subitem">[[PageM2P2|표준게놈데이터센터]]</span> <span class="subitem">[[PageM2P5|유전체연구서비스]]</span> <span class="subitem active">연구성과</span>
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= 연구 성과 =
  
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= 연구 성과 =
 
  
  
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| 2021.0.05
 
| 2021.0.05
 
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== 논문 ==
 
== 논문 ==
 +
 +
1)Almal S, et al. 2019. Sequencing and analysis of the whole genome of Indian Gujarati male. Genomics 111: 196-204. doi: 10.1016/j.ygeno.2018.02.003
 +
 +
 +
2)Aranda M, et al. 2016. Genomes of coral dinoflagellate symbionts highlight evolutionary adaptations conducive to a symbiotic lifestyle. Sci Rep 6: 39734. doi: 10.1038/srep39734
 +
 +
 +
3)Ball MP, et al. 2012. A public resource facilitating clinical use of genomes. Proc Natl Acad Sci U S A 109: 11920-11927. doi: 10.1073/pnas.1201904109
 +
 +
 +
4)Bhak Y, et al. 2017. Myotis rufoniger genome sequence and analyses: M. rufoniger's genomic feature and the decreasing effective population size of Myotis bats. PLoS One 12: e0180418. doi: 10.1371/journal.pone.0180418
 +
 +
 +
5)Bhak Y, et al. 2019. Depression and suicide risk prediction models using blood-derived multi-omics data. Transl Psychiatry 9: 262. doi: 10.1038/s41398-019-0595-2
 +
 +
 +
6)Cho YS, et al. 2013. The tiger genome and comparative analysis with lion and snow leopard genomes. Nat Commun 4: 2433. doi: 10.1038/ncomms3433
 +
 +
 +
7)Cho YS, et al. 2016. An ethnically relevant consensus Korean reference genome is a step towards personal reference genomes. Nat Commun 7: 13637. doi: 10.1038/ncomms13637
 +
 +
 +
8)Chung O, et al. 2015. The first whole genome and transcriptome of the cinereous vulture reveals adaptation in the gastric and immune defense systems and possible convergent evolution between the Old and New World vultures. Genome Biol 16: 215. doi: 10.1186/s13059-015-0780-4
 +
 +
 +
9)Chung O, et al. 2022. The Analyses of Cetacean Virus-Responsive Genes Reveal Evolutionary Marks in Mucosal Immunity-Associated Genes. Biochem Genet. doi: 10.1007/s10528-022-10221-8
 +
 +
 +
10)Han JY, et al. 2014. Whole-genome analysis of a patient with early-stage small-cell lung cancer. Pharmacogenomics J 14: 503-508. doi: 10.1038/tpj.2014.17
 +
 +
 +
11)Ilyas M, et al. 2015. Whole genome sequencing of an ethnic Pathan (Pakhtun) from the north-west of Pakistan. BMC Genomics 16: 172. doi: 10.1186/s12864-015-1290-1
 +
 +
 +
12)Jeon YJ, et al. 2014. The feasibility study of non-invasive fetal trisomy 18 and 21 detection with semiconductor sequencing platform. PLoS One 9: e110240. doi: 10.1371/journal.pone.0110240
 +
 +
 +
13)Jun J, et al. 2014. Whole genome sequence and analysis of the Marwari horse breed and its genetic origin. BMC Genomics 15 Suppl 9: S4. doi: 10.1186/1471-2164-15-S9-S4
 +
 +
 +
14)Keane M, et al. 2015. Insights into the evolution of longevity from the bowhead whale genome. Cell Rep 10: 112-122. doi: 10.1016/j.celrep.2014.12.008
 +
 +
 +
15)Kim BC, et al. 2015. Profiling age-related epigenetic markers of stomach adenocarcinoma in young and old subjects. Cancer Inform 14: 47-54. doi: 10.4137/CIN.S16912
 +
 +
 +
16)Kim EH, et al. 2014. New lung cancer panel for high-throughput targeted resequencing. Genomics Inform 12: 50-57. doi: 10.5808/GI.2014.12.2.50
 +
 +
 +
17)Kim HM, et al. 2013. Whole genome comparison of donor and cloned dogs. Sci Rep 3: 2998. doi: 10.1038/srep02998
 +
 +
 +
18)Kim HM, et al. 2019. The genome of the giant Nomura's jellyfish sheds light on the early evolution of active predation. BMC Biol 17: 28. doi: 10.1186/s12915-019-0643-7
 +
 +
 +
19)Kim HS, et al. 2019. Chromosome-scale assembly comparison of the Korean Reference Genome KOREF from PromethION and PacBio with Hi-C mapping information. Gigascience 8. doi: 10.1093/gigascience/giz125
 +
 +
 +
20)Kim J, et al. 2019. The complete mitochondrial genome of a Dokdo shrimp, Lebbeus groenlandicus. Mitochondrial DNA B Resour 4: 4196-4197. doi: 10.1080/23802359.2019.1693290
 +
 +
 +
21)Kim J, et al. 2020. Whole-genome, transcriptome, and methylome analyses provide insights into the evolution of platycoside biosynthesis in Platycodon grandiflorus, a medicinal plant. Hortic Res 7: 112. doi: 10.1038/s41438-020-0329-x
 +
 +
 +
22)Kim J, et al. 2022. Chromosome-Level Genome Assembly of the Butter Clam Saxidomus purpuratus. Genome Biol Evol 14. doi: 10.1093/gbe/evac106
 +
 +
 +
23)Kim J, et al. 2018. KoVariome: Korean National Standard Reference Variome database of whole genomes with comprehensive SNV, indel, CNV, and SV analyses. Sci Rep 8: 5677. doi: 10.1038/s41598-018-23837-x
 +
 +
 +
24)Kim J, et al. 2018. KoVariome: Korean National Standard Reference Variome database of whole genomes with comprehensive SNV, indel, CNV, and SV analyses. Sci Rep 8: 5677. doi: 10.1038/s41598-018-23837-x
 +
 +
 +
25)Kim S, et al. 2016. Comparison of carnivore, omnivore, and herbivore mammalian genomes with a new leopard assembly. Genome Biol 17: 211. doi: 10.1186/s13059-016-1071-4
 +
 +
 +
26)Kim S, et al. 2016. Comparison of two high-throughput semiconductor chip sequencing platforms in noninvasive prenatal testing for Down syndrome in early pregnancy. BMC Med Genomics 9: 22. doi: 10.1186/s12920-016-0182-9
 +
 +
 +
27)Lee YS, et al. 2014. Genomic profile analysis of diffuse-type gastric cancers. Genome Biol 15: R55. doi: 10.1186/gb-2014-15-4-r55
 +
 +
 +
28)Lee YS, et al. 2015. SLC15A2 genomic variation is associated with the extraordinary response of sorafenib treatment: whole-genome analysis in patients with hepatocellular carcinoma. Oncotarget 6: 16449-16460. doi: 10.18632/oncotarget.3758
 +
 +
 +
29)Nam K, et al. 2017. Analysis of the FGF gene family provides insights into aquatic adaptation in cetaceans. Sci Rep 7: 40233. doi: 10.1038/srep40233
 +
 +
 +
30)Park KD, et al. 2012. Whole transcriptome analyses of six thoroughbred horses before and after exercise using RNA-Seq. BMC Genomics 13: 473. doi: 10.1186/1471-2164-13-473
 +
 +
 +
31)Seidualy M, et al. 2020. Decoding a highly mixed Kazakh genome. Hum Genet 139: 557-568. doi: 10.1007/s00439-020-02132-8
 +
 +
 +
32)Xu X, et al. 2013. The genetic basis of white tigers. Curr Biol 23: 1031-1035. doi: 10.1016/j.cub.2013.04.054
 +
 +
 +
33)Yew CW, et al. 2018. Genomic structure of the native inhabitants of Peninsular Malaysia and North Borneo suggests complex human population history in Southeast Asia. Hum Genet 137: 161-173. doi: 10.1007/s00439-018-1869-0
 +
 +
 +
34)Yim HS, et al. 2014. Minke whale genome and aquatic adaptation in cetaceans. Nat Genet 46: 88-92. doi: 10.1038/ng.2835
 +
 +
 +
35)Yoon K, et al. 2013. Comprehensive genome- and transcriptome-wide analyses of mutations associated with microsatellite instability in Korean gastric cancers. Genome Res 23: 1109-1117. doi: 10.1101/gr.145706.112
 +
 +
 +
36)Young-Joon Ko ECY, Jae-Hak Lee, Kyeong Won Lee, Jae-Yeon Jeong, Kiejung Park, Oksung Chung, Jong Bhak, Jung-Hyun Lee & Hyung-Soon Yim 2015. Characterization of cetacean Numt and its application into cetacean phylogeny. Genes & Genomics 37: 1061–1071. doi: 10.1007/s13258-015-0353-7
 +
 +
 +
37)Yun SM, et al. 2014. PPP1R1B-STARD3 chimeric fusion transcript in human gastric cancer promotes tumorigenesis through activation of PI3K/AKT signaling. Oncogene 33: 5341-5347. doi: 10.1038/onc.2013.472
 +
</div> </div>

Latest revision as of 14:53, 7 October 2022

연구 성과

특허

순번 출원번호 발명의 명칭 발명의 명칭(영문) 출원일자
1 1020120113514 저산소증 적응 형질에 대한신규 단일염기변이 마커 Novel single nucleotide variation markers specific for hypoxia adaptation 2012.10.12
2 1020120113513 백색 털 형질에 대한 신규 단일염기변이 마커 Novel single nucleotide variation markers specific for white hair phenotype 2012.10.12
3 1020130007720 제노타입 기반 에스엔에스를 이용한 그루핑 시스템 Grouping System using SNS of Genotype 2013.01.23
4 1020130095143 식물 분자 육종을 위한,코어 재조합 블럭 기반의 서열분석방법 A Method of Analyzing sequences based on Core Recombination Blocks for Molecular breeding Plants 2013.08.12
5 1020170006310 공통서열을포함한참조표준게놈지도 구축장치및방법 Apparatus and method constructing consensus reference genome map 2017.01.13
6 1022659650000 감초 신품종 판별용 SNP 마커 및 이의 용도 SNP Markers for Identification of Glycyrrhiza uralensis and Use thereof 2019.10.14
7 1022791810000 감초 신품종 다감 판별용 SNP 마커 및 이의 용도 SNP Markers for Identification of Dagam, New Varieties of Glycyrrhiza uralensis and Use thereof 2021.0.05

 

논문

1)Almal S, et al. 2019. Sequencing and analysis of the whole genome of Indian Gujarati male. Genomics 111: 196-204. doi: 10.1016/j.ygeno.2018.02.003


2)Aranda M, et al. 2016. Genomes of coral dinoflagellate symbionts highlight evolutionary adaptations conducive to a symbiotic lifestyle. Sci Rep 6: 39734. doi: 10.1038/srep39734


3)Ball MP, et al. 2012. A public resource facilitating clinical use of genomes. Proc Natl Acad Sci U S A 109: 11920-11927. doi: 10.1073/pnas.1201904109


4)Bhak Y, et al. 2017. Myotis rufoniger genome sequence and analyses: M. rufoniger's genomic feature and the decreasing effective population size of Myotis bats. PLoS One 12: e0180418. doi: 10.1371/journal.pone.0180418


5)Bhak Y, et al. 2019. Depression and suicide risk prediction models using blood-derived multi-omics data. Transl Psychiatry 9: 262. doi: 10.1038/s41398-019-0595-2


6)Cho YS, et al. 2013. The tiger genome and comparative analysis with lion and snow leopard genomes. Nat Commun 4: 2433. doi: 10.1038/ncomms3433


7)Cho YS, et al. 2016. An ethnically relevant consensus Korean reference genome is a step towards personal reference genomes. Nat Commun 7: 13637. doi: 10.1038/ncomms13637


8)Chung O, et al. 2015. The first whole genome and transcriptome of the cinereous vulture reveals adaptation in the gastric and immune defense systems and possible convergent evolution between the Old and New World vultures. Genome Biol 16: 215. doi: 10.1186/s13059-015-0780-4


9)Chung O, et al. 2022. The Analyses of Cetacean Virus-Responsive Genes Reveal Evolutionary Marks in Mucosal Immunity-Associated Genes. Biochem Genet. doi: 10.1007/s10528-022-10221-8


10)Han JY, et al. 2014. Whole-genome analysis of a patient with early-stage small-cell lung cancer. Pharmacogenomics J 14: 503-508. doi: 10.1038/tpj.2014.17


11)Ilyas M, et al. 2015. Whole genome sequencing of an ethnic Pathan (Pakhtun) from the north-west of Pakistan. BMC Genomics 16: 172. doi: 10.1186/s12864-015-1290-1


12)Jeon YJ, et al. 2014. The feasibility study of non-invasive fetal trisomy 18 and 21 detection with semiconductor sequencing platform. PLoS One 9: e110240. doi: 10.1371/journal.pone.0110240


13)Jun J, et al. 2014. Whole genome sequence and analysis of the Marwari horse breed and its genetic origin. BMC Genomics 15 Suppl 9: S4. doi: 10.1186/1471-2164-15-S9-S4


14)Keane M, et al. 2015. Insights into the evolution of longevity from the bowhead whale genome. Cell Rep 10: 112-122. doi: 10.1016/j.celrep.2014.12.008


15)Kim BC, et al. 2015. Profiling age-related epigenetic markers of stomach adenocarcinoma in young and old subjects. Cancer Inform 14: 47-54. doi: 10.4137/CIN.S16912


16)Kim EH, et al. 2014. New lung cancer panel for high-throughput targeted resequencing. Genomics Inform 12: 50-57. doi: 10.5808/GI.2014.12.2.50


17)Kim HM, et al. 2013. Whole genome comparison of donor and cloned dogs. Sci Rep 3: 2998. doi: 10.1038/srep02998


18)Kim HM, et al. 2019. The genome of the giant Nomura's jellyfish sheds light on the early evolution of active predation. BMC Biol 17: 28. doi: 10.1186/s12915-019-0643-7


19)Kim HS, et al. 2019. Chromosome-scale assembly comparison of the Korean Reference Genome KOREF from PromethION and PacBio with Hi-C mapping information. Gigascience 8. doi: 10.1093/gigascience/giz125


20)Kim J, et al. 2019. The complete mitochondrial genome of a Dokdo shrimp, Lebbeus groenlandicus. Mitochondrial DNA B Resour 4: 4196-4197. doi: 10.1080/23802359.2019.1693290


21)Kim J, et al. 2020. Whole-genome, transcriptome, and methylome analyses provide insights into the evolution of platycoside biosynthesis in Platycodon grandiflorus, a medicinal plant. Hortic Res 7: 112. doi: 10.1038/s41438-020-0329-x


22)Kim J, et al. 2022. Chromosome-Level Genome Assembly of the Butter Clam Saxidomus purpuratus. Genome Biol Evol 14. doi: 10.1093/gbe/evac106


23)Kim J, et al. 2018. KoVariome: Korean National Standard Reference Variome database of whole genomes with comprehensive SNV, indel, CNV, and SV analyses. Sci Rep 8: 5677. doi: 10.1038/s41598-018-23837-x


24)Kim J, et al. 2018. KoVariome: Korean National Standard Reference Variome database of whole genomes with comprehensive SNV, indel, CNV, and SV analyses. Sci Rep 8: 5677. doi: 10.1038/s41598-018-23837-x


25)Kim S, et al. 2016. Comparison of carnivore, omnivore, and herbivore mammalian genomes with a new leopard assembly. Genome Biol 17: 211. doi: 10.1186/s13059-016-1071-4


26)Kim S, et al. 2016. Comparison of two high-throughput semiconductor chip sequencing platforms in noninvasive prenatal testing for Down syndrome in early pregnancy. BMC Med Genomics 9: 22. doi: 10.1186/s12920-016-0182-9


27)Lee YS, et al. 2014. Genomic profile analysis of diffuse-type gastric cancers. Genome Biol 15: R55. doi: 10.1186/gb-2014-15-4-r55


28)Lee YS, et al. 2015. SLC15A2 genomic variation is associated with the extraordinary response of sorafenib treatment: whole-genome analysis in patients with hepatocellular carcinoma. Oncotarget 6: 16449-16460. doi: 10.18632/oncotarget.3758


29)Nam K, et al. 2017. Analysis of the FGF gene family provides insights into aquatic adaptation in cetaceans. Sci Rep 7: 40233. doi: 10.1038/srep40233


30)Park KD, et al. 2012. Whole transcriptome analyses of six thoroughbred horses before and after exercise using RNA-Seq. BMC Genomics 13: 473. doi: 10.1186/1471-2164-13-473


31)Seidualy M, et al. 2020. Decoding a highly mixed Kazakh genome. Hum Genet 139: 557-568. doi: 10.1007/s00439-020-02132-8


32)Xu X, et al. 2013. The genetic basis of white tigers. Curr Biol 23: 1031-1035. doi: 10.1016/j.cub.2013.04.054


33)Yew CW, et al. 2018. Genomic structure of the native inhabitants of Peninsular Malaysia and North Borneo suggests complex human population history in Southeast Asia. Hum Genet 137: 161-173. doi: 10.1007/s00439-018-1869-0


34)Yim HS, et al. 2014. Minke whale genome and aquatic adaptation in cetaceans. Nat Genet 46: 88-92. doi: 10.1038/ng.2835


35)Yoon K, et al. 2013. Comprehensive genome- and transcriptome-wide analyses of mutations associated with microsatellite instability in Korean gastric cancers. Genome Res 23: 1109-1117. doi: 10.1101/gr.145706.112


36)Young-Joon Ko ECY, Jae-Hak Lee, Kyeong Won Lee, Jae-Yeon Jeong, Kiejung Park, Oksung Chung, Jong Bhak, Jung-Hyun Lee & Hyung-Soon Yim 2015. Characterization of cetacean Numt and its application into cetacean phylogeny. Genes & Genomics 37: 1061–1071. doi: 10.1007/s13258-015-0353-7


37)Yun SM, et al. 2014. PPP1R1B-STARD3 chimeric fusion transcript in human gastric cancer promotes tumorigenesis through activation of PI3K/AKT signaling. Oncogene 33: 5341-5347. doi: 10.1038/onc.2013.472

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